NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209975_1001346

Scaffold Ga0209975_1001346


Overview

Basic Information
Taxon OID3300026993 Open in IMG/M
Scaffold IDGa0209975_1001346 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel4S_1600h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2490
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029387Metagenome / Metatranscriptome188Y
F059777Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0209975_10013462F059777GAGMATVTRAQLIALTREYMDAVGSTRWSDDTIKTVLNSVYDEEWSNILNAAPFYTFQQLTLTTDSNGQIPFSSLSTGGGDSQKNFYRILSVSDGNVLYNQTEFSYVPLATTTNYLPTYPRLYYYVGTNVQILPVGSGTTIYVAVNYKPTSLSDLASDSSVIDFPGNSELLLTAVASAKLLLKGGAEVSAANNYRALANEERQSLLDDLRRRTINPTMMAYPDQKYDWSGG
Ga0209975_10013463F029387GGAGMAAEPGGVRLADQQPKFDGGLNDVSDDSALQPNQMRRSNNARLTDYGAVTKRGGTQRSSTAALASAAVLNGFTFRQDSGTEQILAVCNGVLRTTTYGAFPWTWATQAGALSTTVVPSFAQFRDSGGNDVVYIADGGALNKWNGTTLTTNIVGTVASDVIAVHNERLWAAGNTSFPDSIFYSDLNNGDSLGNGGSGGGQIIVRTFGDEAVVGLASINTSLLIFHRRGISRLTGFGQDDITVAPAAVTADVGTIAPDSIVASNNVAFFISERGLYRCNEAEVAPVGTPDKPDPLLPIIRQLSDSQFANIRAIVNRATKELWITMPGFGCYQYHTVLNAFSGPWDGAYTSPDTTALFETLNDEGLPVVLKGDASGWVSLCDAPGVYKDNVAADGTGGTRYAMSVQLHRLYCGDDALTKSLRWGYLTAQLKGSDQCRVEWNTGDNFGSFSLPPSTDETWGGAGTYWGQGTWGGAGSRSYRIPLGGWGYYVD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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