NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207824_1001155

Scaffold Ga0207824_1001155


Overview

Basic Information
Taxon OID3300026990 Open in IMG/M
Scaffold IDGa0207824_1001155 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 73 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3774
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014659Metagenome261Y
F024635Metagenome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0207824_100115511F014659N/AMSRAAIILATIFTGILPFSSLLLAASDEEINGLGDKMSGAFRCSTYAQLMHDQKEQQRLFQIGLKAGRDYVEGLKSRDDPTMGEMSTFIRGVSTDFVVGQLYEAESTHAYDEIVKYQNGLPLNKWFDAPEPKNQAERIYGQSNCSLIQ
Ga0207824_10011556F024635AGGMTALNNFNEQVREFYQQAVDCARQADAQNDPKVKQQFLELKRLWLLLAQRCKFNKT

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