NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207835_1039601

Scaffold Ga0207835_1039601


Overview

Basic Information
Taxon OID3300026953 Open in IMG/M
Scaffold IDGa0207835_1039601 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 8 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)595
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009421Metagenome / Metatranscriptome318Y
F024151Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0207835_10396011F024151N/APVEVVLLRSGHRRLREATLVEYGTQEFAIFLSNLALEFDDRVRLVRDGKGTPAEAAVIALQYHEGSKAVAVRFLEGPCDWMVHP
Ga0207835_10396012F009421GGAVNKLITTLNLPAPPKSETSRQAQWDETRSVFPIYLALAKHLQFEIPFPQNKRVLPEKADLEFFSQVHTWLDSMDQQVMVHQLRHLLQMTTLIASESGMRALIMRHLRKSVKTNT

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