NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207836_1044622

Scaffold Ga0207836_1044622


Overview

Basic Information
Taxon OID3300026932 Open in IMG/M
Scaffold IDGa0207836_1044622 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 18 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)515
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003551Metagenome / Metatranscriptome480Y
F010636Metagenome / Metatranscriptome301Y

Sequences

Protein IDFamilyRBSSequence
Ga0207836_10446221F010636AGGAGMKVLSGLLLTPTFAAALLLACTQTNAAHRGGGSAYDGTWSVAIY
Ga0207836_10446222F003551N/AVAGAVGYGVYSKWTEDGLRRTEADMKSNLPLRVDQNTTLVDVKYDKTHSTYWYVIDKPDQFDAQETARQVQIGVCTNADNSRTMKKEGFSYEYHYRTKEGLALTDFKITTCE

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