NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209850_1007681

Scaffold Ga0209850_1007681


Overview

Basic Information
Taxon OID3300026931 Open in IMG/M
Scaffold IDGa0209850_1007681 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T2_23-Sept-14 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)912
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023096Metagenome / Metatranscriptome211N
F025727Metagenome / Metatranscriptome200N

Sequences

Protein IDFamilyRBSSequence
Ga0209850_10076812F023096N/AMKQSSTHDLVNALNILSAELDTPDGIPNALIAEASTRLLELVQLTSDLTAHIISNPVHHGRCNAKTKGSYCNCILARLITS
Ga0209850_10076813F025727N/AMSRHAFPLVESIKVVHLSDGRTIRVRRDRTEENLKANYGDGDIHLTCVSQAHDPIEMVKTLARMESVRSVELVDSKGNGLVVHKQK

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