Scaffold Ga0209850_1001531

Overview

Basic Information

• Taxon OID: 3300026931
• Scaffold ID: Ga0209850_1001531
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T2_23-Sept-14 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2114
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008688	Metagenome / Metatranscriptome	329	N
F015867	Metagenome / Metatranscriptome	251	N
F018713	Metagenome	233	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209850_10015316	F008688	GGA	MSKVILTCLLGLFITATVEPPKTKVYLIMSYRGNDLSIEKVYLKKENAQKYCDMYKDSHNYSVEEKELTE
Ga0209850_10015317	F015867	GAG	MKYKVNYYDYDSDSYLEKDLYWMASYRGSFDFVPVDDGPKENWKGFSISGSGVNVFYNEKGLNITVDGFQEMKSGGYGKTTTFIQGVI
Ga0209850_10015318	F018713	N/A	YLIMNLDPNLWAEIPQEVKNAAILLGNYFKKKGLDSWTLYDVSSRQNFNGVYNQGLDTAISLVSEGSDMETIICGLENSKKQFSNEGGDGIDYTKSF