Scaffold Ga0209850_1000594

Overview

Basic Information

• Taxon OID: 3300026931
• Scaffold ID: Ga0209850_1000594
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T2_23-Sept-14 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3533
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002707	Metagenome	535	Y
F009514	Metagenome	316	N
F010837	Metagenome	298	Y
F063467	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209850_10005941	F010837	AGG	MGRPSNPQTRYFQRTLSDPQRMILLAAGNGNLCRGFENVLDLYLEAHNQGFRPNMPLSFLNIGRATTNNPNSSESV
Ga0209850_10005943	F009514	AGG	MTKDQILALQSIGKGIIEAANIDSIGAPSGVIYSALMSHGATLNQFQQIMSTLERHGFLSHDVDASTYHATEAGLQWSKKV
Ga0209850_10005945	F002707	AGGTGG	MSQIEALTQCLVLALTAPNDQKAQQAAQLAEQIAHGLTKKQVNQCKQAAIKLWGEQ
Ga0209850_10005949	F063467	AGGGGG	MNREDIIRIAKEARFYIQDNEAYSPSNQEDFELTEHLERFAKLVAKHERNEIIEILDASTGYVHMDAIRERT