NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207922_100053

Scaffold Ga0207922_100053


Overview

Basic Information
Taxon OID3300026926 Open in IMG/M
Scaffold IDGa0207922_100053 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized - NN335 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1200
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Source Dataset Sampling Location
Location NameChapel Hill, North Carolina, USA
CoordinatesLat. (o)35.913Long. (o)-79.056Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049197Metagenome147N

Sequences

Protein IDFamilyRBSSequence
Ga0207922_1000531F049197GGAMVREEARRTLLREYDKWAKDHPDDATNMGGMVFFTYLQKEKSDLLDFHAVGGDKWATVHGWLYYTGRVR

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