Scaffold Ga0208575_1006725

Overview

Basic Information

• Taxon OID: 3300026920
• Scaffold ID: Ga0208575_1006725
• Source Dataset Name: Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN397 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1179
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Source Dataset Sampling Location

• Location Name: Willamette National Forest, Oregon, USA
• Coordinates
  • Lat. (^o): 44.20517707
  • Long. (^o): -122.1284473

Associated Families

Family	Category	Number of Sequences	3D Structure?
F100025	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208575_10067251	F100025	AGG	VGRFLRLVATSGENTIGTLMKEDTETLAELMFHADQFCSKVEDAIKDVAPTPEEKDLRLKIGQCRNQLAYLQELFNDGKLTIENPRVRAEFRQLIVALLWIAFYARSAIDFRIFRMLVMIESGFTYLLVSRQPGQEKCST