NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207840_1017488

Scaffold Ga0207840_1017488


Overview

Basic Information
Taxon OID3300026910 Open in IMG/M
Scaffold IDGa0207840_1017488 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 65 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)721
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008099Metagenome339Y
F011802Metagenome287Y

Sequences

Protein IDFamilyRBSSequence
Ga0207840_10174881F011802N/AMTFDLQKAQSLSEIPACRGPEVLALLIDVNPIQKPELQRYRARVEKFCSNFVIRKIMGDITVPFVEAVVDRMFNADEVTSVVDLAKLELLKRKIVSLFFTR
Ga0207840_10174882F008099N/AMNLYNVYFVSKGTGPRTIQIEAKNSAGVKAQVEARYPGAYNITLSQLPTSAKKKRE

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