NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208683_110146

Scaffold Ga0208683_110146


Overview

Basic Information
Taxon OID3300026906 Open in IMG/M
Scaffold IDGa0208683_110146 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_9_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1608
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027904Metagenome / Metatranscriptome193N
F067921Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0208683_1101463F067921N/AVLALQETFSRIEDRILRNGQYLLVSYSSSQHPDESSYTGFRVTKHNFTTLYYNFATEVSNFLPMAPFGGQASSTTSPPYITNFKFSLQLVQNVTDMFDLSRNYDAYQVFYGIAPSYLRTMLQIQQQFIAVLEQNINPSPSFVEMGIDGFQSPLFAPDPRTEFIVFSNLTYNMTLMNTATIPIMPAFNFVINRMTLEPLSKQEIRKAILAGFPVRTLGAVDSAIPVSRDNYPGLQTVTYKEVYGGGS
Ga0208683_1101464F027904GGAGGVQCKYEPPTYDLFNLNNGSTLVGTSPVTLLYEGQPNAAVYAPPDLTLRAKQIIIQNATTSPITVQLLAVAAPNTTLPSPIPKTPPIPVNAGSAVTLSEEEWGIAVRSGYGLAAVSSAANSANVYVKCYFTKGTGMPV

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