NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208662_105896

Scaffold Ga0208662_105896


Overview

Basic Information
Taxon OID3300026885 Open in IMG/M
Scaffold IDGa0208662_105896 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - OSPB_host_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2133
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031931Metagenome181N
F051270Metagenome144N

Sequences

Protein IDFamilyRBSSequence
Ga0208662_1058961F031931N/ATPPSASLVSSTIYPFKVADAMSIGLGLTATEGGVQLSKGYTNLYSQILAETDSAVFHAIIYSELAPLQSNTLIESITPVISLESLLKILQQQENIQLQLYGSVEQAVLPPGVTLCVPQSVTSGSVSGETVTENVGVQYASCLPPEGLEFDEINIVSFLGFPPYNQTDEISTNAYLGLPSPNQTDEIAVSYSVRT
Ga0208662_1058963F051270GAGVISMKVGIYGYLRIKELGKTIKNNINYQQLMPLLFQLLNNTIGNIIGANYIDVQGYGNNATVTVGTNTITFSASITVPYLNGFNAILYGYFNLGRNNYMIQLATINTTEQIPAGTYTFEWIISFADPSGIIFNLMALSLTGNLKSVSVSFSP

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.