Scaffold Ga0208662_103768

Overview

Basic Information

• Taxon OID: 3300026885
• Scaffold ID: Ga0208662_103768
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - OSPB_host_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3088
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Sulfolobales → Sulfolobaceae → Sulfolobus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.733
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018029	Metagenome / Metatranscriptome	237	Y
F021133	Metagenome / Metatranscriptome	220	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208662_1037682	F021133	N/A	MTRRDDLIRQIYENGNFVIKKICEMNPDDNMANFSATDCIIGTTNTHLALKIAKEKGYPQDVIEYLENQSKQEQWHCRLHIGKPPKPYDFVVAQKHREILLKYGIYVWMGVMPLLGEKIALAKAICWRRNDDPHFVNKFATVDEYYHTTYPLLLLYKYASEEELEKIVELQKEYIVNIFKLK
Ga0208662_1037683	F018029	GAGG	MVICMYLWQIIREKIQKEELDEEEMRDLLDYLNTLKEELRKLRIMLYSPFGYIVDFDVVFKDPWYCSEVHLRLLNGEHGLLYLDSFIWRLFTGQIEVKPFIQGLR