Scaffold Ga0208662_101151

Overview

Basic Information

• Taxon OID: 3300026885
• Scaffold ID: Ga0208662_101151
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - OSPB_host_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7903
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Acidilobaceae → Acidilobus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.733
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014278	Metagenome / Metatranscriptome	264	N
F082927	Metagenome / Metatranscriptome	113	N
F103564	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208662_10115111	F082927	GAGG	MSGQEEKQEQHKSFFEENGRLLVELDDFLTTLQVWARVDHILSNSQQLDLAYELGVIDGIASALAALDNSNKALKFLYNRKNIKEFSKLVDAVEHYHYMLVRGEVEDPEGYLWEFDLLVDSFIEFMAKAIKSIKTCSPFDR
Ga0208662_1011517	F103564	GAGG	MSDRKTITKKPLKELIKPFAPLILIIGIPIGSIYLPYNNVDLVFLRAWLLILDFDIMALYYIYLSKDDLQSPNAKRRLSAIKGIKLEAAIAYIFTACGIFTGGFALASYLIVALGLTKLPAPMTSQEAILLLLLLVTLLIPAYVVRRETKKAIRLGMENATNT
Ga0208662_1011518	F014278	N/A	VVDKGFLKGLALAVGVPALVIFILGLLFRPPTIIYVHATPVWTTQAVEKNITITINEDYASWATLYCNVSSNAPINVWLARASDYYSGPLTVRLDASAPNYTVTTGWGVTIDNSSIAYIEQAILHVYGNNVSFAVNLTKGKYVLFIGASQPNAVIEVHSCFITYNVYTTGPSPLEQFLNRVFG