NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208313_105776

Scaffold Ga0208313_105776


Overview

Basic Information
Taxon OID3300026882 Open in IMG/M
Scaffold IDGa0208313_105776 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Slides-mat_host_7_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1770
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008949Metagenome / Metatranscriptome325Y
F011097Metagenome / Metatranscriptome295Y
F030159Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0208313_1057761F030159N/AAWTRDSVEIPYYPEMGTCRPYLTTLPDGKLKVTMGGYHADNYIDGIAIYMDKSDISPKGKTLVTVPSLIFGQTSPGGSYYVIAGYNPYNSTYHGVVAYTFGKKYARIYLNITGYNRDFINIYTRYRSRSAPDLQQMYGNSPNPNNTATYYPSVEGNFGTLVYATDYSYNMPYATGYARTSKFRVDDQVLWVLTINGFGPVWVELEGD
Ga0208313_1057762F011097GGAGGMIRDVRLYTSGGTDPFTGSSVGGSPITGNSSNYQFLRFHPNYARLHIYITGLSGTSPSIQFTIGSPIGANFYTLPPITSPIYIYVIGNENKTIITYLNTNAQVLQQVELPYNIFLNGASVSWSVAGTSPSITAYIHFEFEDEEEDE
Ga0208313_1057763F008949AGGAGGMSSQTVQLGTQTITPKVQDLGNSYYIEFQVNITKYLNNPVNQTIDIRFICNKYKQVVVPSANPLSSPTVQTIQKTIQECVDEWFDQHKSVYEVA

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.