NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208313_102787

Scaffold Ga0208313_102787


Overview

Basic Information
Taxon OID3300026882 Open in IMG/M
Scaffold IDGa0208313_102787 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Slides-mat_host_7_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2927
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008949Metagenome / Metatranscriptome325Y
F045200Metagenome / Metatranscriptome153Y
F076262Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0208313_1027871F076262AGGTGGMSLNPVIKGSYTLAAPQTVSVAASSSSSVSISFTPLGAGELYVYIALPSGVTATISIGGQSVSLSNGSNQFLIPANITIGNITINNSNTTAVSVVVWALFIEVA
Ga0208313_1027872F008949AGGAGGMSSQTVKLGTQTITPKVQDLGNSYYIEFQVNITKYLNNPVNHTIDIRFTCNKYKQVVVPSANPLSPPTVQTVQKTIQECVDEWFDQHKSVYEVA
Ga0208313_1027874F045200N/AGGLLTPSAPEDRTYLVWFGSPAGTTNEKPQFSIFYAKVHPDQYKPGAPASQWLDPPVLLVSYDQISRDVVNWADNIFTAAGYTPSSPGVINVPNNVYVTNYGYVNYYGAPSTVTLNFTGTPELKQLHMIYDMLDDTVLMYFSIIVPNWNPSTKAQYVYKFPVSLLKSQQSINQYAVSGLTPTTTSTPPPNDKPYFLGWLKFDSTVEQTIGNAVGLNLVNTLQMQSAPQFAISFDWYKLGGFMGYKPSNGFLPAIYVGNPVYMSSYNYPHGDSLMAIAFADIHKNPAQPQTYYQPIVTNYGSGFPAFIYLPENLGSCPSSYGSNSYYCIPILGFAGQLDTFDLGLNIDKFGSIVPGESFGIHGTYIIPITLPPRPDWGGISSMRMKVLYVAPIFHQFQGYGGLSFAWTRDSVEIPYYPEMGTCRPYLTTLPDGKLKVTMGGYHADNYIDGIAIYIDKSVISPKGKTLVTVPSLIFGQTSPGGSYYVIAGSNGINLIYHGVVAYTFGKKYARVYANINAYNAAFINIYTRYRSQSAPDLQQMYGNSPNPNNTATYYPVIERNFGTLVHVTDYSYNMPYSLGYPRTSKFRVDGQVLWVITNDSISPIWVELEGD

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