Scaffold Ga0208313_101670

Overview

Basic Information

• Taxon OID: 3300026882
• Scaffold ID: Ga0208313_101670
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Slides-mat_host_7_15 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4278
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.733
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075084	Metagenome / Metatranscriptome	119	N
F076263	Metagenome / Metatranscriptome	118	Y
F081547	Metagenome / Metatranscriptome	114	Y
F087442	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208313_1016703	F075084	GGA	MDFTSQNPTGKLFRRAGVAMVYARRLSASWYGYDTGVLLERSLRRILRWSINYCRVMRELGLESEYCRRYTVYDEVPCERVSEYDVEVAYSRIIRMIANYNSETVSKLLTKMAEECSTYEVRG
Ga0208313_1016706	F087442	GAG	MREGLVKAGDLVIDCKPCYVAGTGFTKDDIYVVSEGTVVFKWYDKIAVVTVGEEGTKVNLLDIIDVRFLVERNENCVAIRL
Ga0208313_1016707	F081547	GGAG	MPYLRGVFVNFGEETYYLSCGIVNGGNLDTETYTINQPDLMMVRMGRDLYVVTSELKLLIPVEPVRVLLNSETSKVYNEVLSQGNEVRPS
Ga0208313_1016708	F076263	N/A	MLSAEDLSAILDDLEDICARIPEGVTFHPTLEIHRKYANEEATYIKFDCRNHKYTLTTVRTGVAKTTRVSSREELFRRLFPEYPPGYSEEIWGGE