Scaffold Ga0208313_101498

Overview

Basic Information

• Taxon OID: 3300026882
• Scaffold ID: Ga0208313_101498
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Slides-mat_host_7_15 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4638
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon OSP_D (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.733
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008949	Metagenome / Metatranscriptome	325	Y
F011097	Metagenome / Metatranscriptome	295	Y
F021133	Metagenome / Metatranscriptome	220	N
F023140	Metagenome / Metatranscriptome	211	Y
F045200	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208313_1014981	F045200	N/A	YGYVNYHGAPSTVTLNFTGTPELKQLHMVYDMLDDTVLMYFSIVVPNWNPGTKAQYVYKFPVSLLKSQQSINQYAVSGLTPTTTSTPPPNDKPYFLGGLKFDNTVEQTIGNAMGLTFGNTLQMQSAPQFAISFDWYKLGGFMGYKPSNGFLPAIYVGNPLYMTNLGSFNYNYPHGDSLMAIAFADIHKNPAQPQTYYQPITTNYGYPAFLSLLPENLGSCPSSYGGYSFYCIPILGFAIQLDVNGLGLNIDKFGSIVPGESYGIPSTYMIPITLPSRPDWGGISSMRMKMLYVAPIFHQFQGYGGLSFAWTRDSVEIPYHPEMGTCRPYLTTLPDGKLKVTMGGYHADNYVDGVAIYLDKSVISPKGKTLVTVPSIIFGQTSAGGSYYVIGSRIPTANFFFAGVVTHTFGKKYARIYSQLNVGNFYFVNIYTRHGTRSQPELQQMYGNSPSPNNASVYVPVMERNFGTLVYLTDYSYNMPYNLSHPRTSKFRVDGQVLWTIANNSNILLLWVELEGD
Ga0208313_1014982	F011097	GAG	VIKIIRDVPLYTSGGTDPFTSITGVSTGGSPITSNGSNYQVLSFHPNYARLHIYITSLSGTSPSIQFTVGSYVGANYYTLPPITSPQYVYVVGNGNKTIITYLNTSNVVLQQVELPYNIFLNGCYVSWSVSGTSPSISAYIHFEFEDEEEGGE
Ga0208313_1014983	F008949	AGGAGG	MSSQTVTLGTQTITPKVEDLGNTYYIEFQVKITKYLNNPTNQTIDVKFTCNKYKQVAAPRTDPLSPPTVQTVQKTIQECVDEWYAQHKSVYEVA
Ga0208313_1014985	F023140	N/A	MFIGLATVPVYIVLKSFPFLAVFGVGVLTTLTVLILFFYFLGAKFVGIWAVLQKFSVTLPTSFTLTHLVKLLSSNPLLDYVVLFSVGYMISTPLIFLTYFVTRWLYDKKGRLNTSNL
Ga0208313_1014986	F021133	AGGTGG	MTKRDDLIRQIYENGNYAIKKICEMEPNDDMANFSATDCIIGSANTHLALWIAKEKGYPPDVVEYLENQSKQEQWHCQLHVGKSPKPYDFKVAQKHREVLLKYGVYVWMGVMPLLGEKIALAKAICWRRNDDPHFANKFATVDEYYHTTYPLLLLYKYASEEELEKIIELQKEYIEKIFN