NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208313_100770

Scaffold Ga0208313_100770


Overview

Basic Information
Taxon OID3300026882 Open in IMG/M
Scaffold IDGa0208313_100770 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Slides-mat_host_7_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7442
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Alphalipothrixvirus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061983Metagenome / Metatranscriptome131Y
F076263Metagenome / Metatranscriptome118Y
F080245Metagenome115N
F085905Metagenome111N
F087442Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0208313_1007701F085905N/ALLFPSSRLSQFDYVAMNAYWLNARLKYFTDPLLYALATGIWVINLMDDVDIAETGTQKDFEYGLVYIYSNSRIDTLFIVALTHYFNVKREKEYYRSIPMDALQNVMKSLVDFMNDKLKILDKLKEKLDERVTLMMWNQLYIFVMGFLYGLYGRDAEPVFQGIVARHLLPFGVLETIRRYTKK
Ga0208313_1007703F061983AGGAGGLKKFVIKVTVIPIKLFDEEGVLSEKEFEEVKKTMTYKGMKVLEIKDLGTDEVRKWTHFYTITAVSEGGGLFDCYYGDTIVVEKLKGVGAIVIGDKDTQPVKTMKTLVAKWYNKQLVYEEKAYEICNKFVT
Ga0208313_1007705F076263N/AMVSLEDVSAVLDDLEDLCARLPEGVTFHPTLELRRNYANEEATYIKFDCRNHRYVLTIVREGVAKTTRLSSREELFRRLFPDYMGEGII
Ga0208313_1007707F087442GAGGMMREGLVKAGNLVVDCKPCYIAGTGFVKDDVYVVSEGTVVFKWYDKIALITVSEEGTKITLLDIIDVRFLVERNENCLVTKL
Ga0208313_1007708F080245N/AMIFVWTAKVIMPGFREEIFVSPALINSLGELTEDVYEVGMFAVPHAGHALLFLPTMVIKVDDELMKNLEQTSIEDLNIPLNTIEHVFT
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