NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208313_100574

Scaffold Ga0208313_100574


Overview

Basic Information
Taxon OID3300026882 Open in IMG/M
Scaffold IDGa0208313_100574 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Slides-mat_host_7_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9149
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (57.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061983Metagenome / Metatranscriptome131Y
F063848Metagenome / Metatranscriptome129N
F076263Metagenome / Metatranscriptome118Y
F085905Metagenome111N
F087442Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0208313_1005742F063848N/AVAKKRRSVHDPTLSVIHYQEQLEKMAKAYEQSASRRNQRAINGFTVLKQVQQTVSDYLNEVSEAMKKPIIAQLRVEFLGIAMAFLKASNEGLNSYALAGRMAQIATLKATDIIHTTTLTCAEVGEIINGMLKKLSGVTADPLTFTEEDGICKATVANPLTKLSVASASTGYTASLTDILKAKTPEEVLMAK
Ga0208313_1005743F085905N/AVEEKLSFPSSRLTQFDYVAMNAYWLNVRLKYFTDPMLYAVATGIWMINLMDDVDIAETGTQKDFEYGLIYVYSNSRVDTLFIVALTHYFNVKREREYYRSIPMDALQSVMKSLVDFMNDKLKILDKLKEKIDERVVLMMWNQLYIFVMGFLYGLYGRDAEAVFQGVVARHLLPYSVLEVIRRHTRK
Ga0208313_1005745F061983AGGAGGLRKYVFKVNVVPVKVFNDDGLLSEQEFDQVVKTRIYKGLKVLEIKDLGYDSFWRTTHYYELVVMSEGGGQFDCYYGDVIDVEKLKGVGAIVVKENDSEFVRTMKILVAKWYNKKLVEEEKAYEVCNTFVT
Ga0208313_1005747F076263N/AMTSAEDLSAIFDDLEDLCARIPEGVIFHPTLEIRRKYANEEATYIKFDCRNHRYTITIIREGIARTARVSSREELFRRLFPEYFPGFAGIYTEEFLGEE
Ga0208313_1005749F087442GAGGMMREGLVEAGNLVIDCKPCYIAGTGFTKDDIYMVSEGTVVFKWYDKIAVITVGKEGTKVNLLNIIDVRFLVERNENCVAIRL
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