NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207739_1001215

Scaffold Ga0207739_1001215


Overview

Basic Information
Taxon OID3300026881 Open in IMG/M
Scaffold IDGa0207739_1001215 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3297
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012660Metagenome278Y
F032257Metagenome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0207739_10012153F032257AGGAGLNDIDFLELPIAAQAAVLCFAACASGLFVMLLAAPRRNCFFFRWRPETRILALLVSPALLILWPVVLYAWFLQSRGIGPDDLDFDDD
Ga0207739_10012158F012660N/ANRAVINLIAVAERSEYGYVDVPPGSVNDEIESELAALGYAVSHSDRLWFGGYRIHTPESIEFGNYRPYVPPSIFTCVASRSAHVPDVRDFDVEAILAERGEIRSI

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