NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209623_1015688

Scaffold Ga0209623_1015688


Overview

Basic Information
Taxon OID3300026880 Open in IMG/M
Scaffold IDGa0209623_1015688 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)528
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009659Metagenome / Metatranscriptome315Y
F077862Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0209623_10156881F077862N/AELSLLVFRNMSSSETTGNFSAAYSQYFTENADLQLRIKVSAFPLSSHSDSGEGDYFEA
Ga0209623_10156882F009659GGAVKLVVDLTGESPGSVNYPVGAVVISGDGAGDQTAGSPDVNVLVGWMRIRSAPTGGQATQQVVAQANRS

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