NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209623_1000906

Scaffold Ga0209623_1000906


Overview

Basic Information
Taxon OID3300026880 Open in IMG/M
Scaffold IDGa0209623_1000906 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1399
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005788Metagenome390Y

Sequences

Protein IDFamilyRBSSequence
Ga0209623_10009062F005788GGAMTPKEFQKSNLTVELKAGKKRLEDALRGLGDEQCERAGATRSGSVMDLLSEIVTNEFLALMEVSDRLPSLPTNLVANADGRIPIASGAKKAAANKSVENLLTEFGVLRSAIIRRTEGREPPGAKHAYVVNVCVTRFNEQIDEIERWRSSEIVGFSAARLRAEAREAELNQAIVDLSREDFLAGDFDLKSLFSLLFDRFYSEDFVLWLGAGEANGRTAAFQRMANVLEPINTLLEMGLASIVSFCATASAQDAEGNFITDWETLLGGTYSTGIAVRWRTVRAWKSRMVIAERIEDQPSPKP

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.