Scaffold Ga0208314_104213

Overview

Basic Information

• Taxon OID: 3300026877
• Scaffold ID: Ga0208314_104213
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_host_9_15 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3063
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.733
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042426	Metagenome / Metatranscriptome	158	N
F048414	Metagenome / Metatranscriptome	148	Y
F061049	Metagenome / Metatranscriptome	132	Y
F063847	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208314_1042132	F048414	GGAGG	MYFGELKESASTSLFYSFLLFVVSFIIVIAGLNYIWGRPALVWLPLGIWNLLITLGIFLSIMIILVIVARRLL
Ga0208314_1042136	F063847	AGGAGG	MRFKKYIFCYDQYSYLQDRMITHHVSIYAKSLKEAESKLEKLGYKDIYLKKKKRKVIY
Ga0208314_1042137	F061049	N/A	MSIFVIKFEKDSSVIREWVLKGNEDLERSLFEMLNIDFQFIDKIRRLEK
Ga0208314_1042138	F042426	GAGG	MEGNVKRLMDLPLKSIYTIGQGETKSGFEVYYLFEYKSGNFSEKADNVYMVYATTVLGEWLTENFEKLKKAIFELEIEFRDSQYNKKIAVPVRVKKIGDKPKAPVQVEEEGF