Scaffold Ga0208314_103182

Overview

Basic Information

• Taxon OID: 3300026877
• Scaffold ID: Ga0208314_103182
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_host_9_15 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3847
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.733
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033508	Metagenome / Metatranscriptome	177	Y
F047176	Metagenome / Metatranscriptome	150	N
F101506	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208314_1031823	F047176	GAGG	VIAVATRIFRFTISLSAGQANNGAQGNPSPFTVTAPSGINRRIVEIRPWGTQAFEYQGNYDTELYHDIDSNDINTYHRPHYVALDINGTHEYSVVMTNNGTATGTFGVDLVVEESALTGGGAAAPAAGGA
Ga0208314_1031824	F033508	AGG	LAAEAAAAPFVSPTTFRRVTGSSTTQVTIPARIGYRHVLYDLFVTFPPAYGYADVSVGTRIFMRIPFQAANIVTVYPPGYKVAGKGFLWGLSDLFGAEHLPNAAEDEDINITLNAAVTRIDAYYAEIKPEDVSSHSVTGGSDAKVKPFIEVLDTLVATTGNGINVLNENMPTGLGLLDNNGRVKATTQFTLLTAFADYVSSGTNFTQYSRLHIYDEDEELFTPLNHEGLFIDYTVALGDLHMNWTVRQYFKPDTPYVFKPNHQVSLKADVPAVTGTGSTLRVALIGVRERIG
Ga0208314_1031827	F101506	N/A	MSEDIVARTKISGIEQRIHSLEEQISEMRTTQLRQLERQNYVLALLAISLITTIVNLVVLLVK