Scaffold Ga0208314_100985

Overview

Basic Information

• Taxon OID: 3300026877
• Scaffold ID: Ga0208314_100985
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_host_9_15 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9233
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.733
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018963	Metagenome / Metatranscriptome	232	N
F040183	Metagenome / Metatranscriptome	162	N
F059131	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208314_10098512	F040183	GGTGG	MKIKYPFPQRFHYLTVLGKYLTPNTTIVASGANTGPLTANTVCDFVQTPNHKELAVNLTIQAVSGTFSTGQGLTAYLDVLDPVEPQNVNVNSSERPPVLELKLNSTAITTAPTTIRLIIANGVATVWINGASTALGNVNVPYIWQVRFAITGTSPSFSIVGTYEARE
Ga0208314_10098515	F059131	N/A	LRDARVYRNQMGEPNILSYGAYIRDFPLPVYALSLSGDGLPFYQSIKIEIVPRNQPALITGFAANIIEIYDVDLFKESVKEFFESITPSVVPPAVPTPPGFVAEEVVSAKLPVRVT
Ga0208314_1009854	F018963	AGGTGG	VQSNVFTAGDKPIGTKLVFPFVRSEDGSIVDTLIMSFRSGRIVHSKLSGNKARGYRTYLLFPANYVMYEVYRTNKGRASIKVSVIDVSPNPLSHFRVKDIWVMYEGVSPVTLIEDLPRNIRVIIEGNSGELPLYEYLETEVPK