NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207785_1025628

Scaffold Ga0207785_1025628


Overview

Basic Information
Taxon OID3300026872 Open in IMG/M
Scaffold IDGa0207785_1025628 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 74 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)515
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026079Metagenome199Y
F057593Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0207785_10256281F057593GGAGGMTTAKEYRTHAKRCFVRAQETDSEELRQASLEMASYWMDAAMRTECLGDSHIEPEQQAA
Ga0207785_10256282F026079N/AAHVADTSESAMAQVPPFTNLDPETAATLSAAYDEAVARLLDQPDVVLENIAERLIALAARGERNTRRLCDEALIAEGFLN

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