Scaffold Ga0207802_1000288

Overview

Basic Information

• Taxon OID: 3300026847
• Scaffold ID: Ga0207802_1000288
• Source Dataset Name: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 20 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5908
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Luquillo Experimental Forest Soil, Puerto Rico
• Coordinates
  • Lat. (^o): 18.0
  • Long. (^o): -65.0
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005756	Metagenome / Metatranscriptome	391	Y
F037519	Metagenome	167	Y
F060165	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207802_10002882	F037519	AGGA	VRRQQHLMWAAWLVYTAAWFLPVVKEGVTLPDGLPGWQAFRVAASAVWPLPDVTIDKWYKTVLFSISAVTTLLFIPGSVSAVWSGSRSLRRASGWIATSAFVINAHWYVLYGASAREDLRIGYFLWWLSFLLGALGLFDLYRREVGSSTT
Ga0207802_10002887	F005756	N/A	VTHVRRKLIWCSILGGVFITLLAIVLRFAGIYGPVPYLTYAGAYLMETFFQRFLEWIPWKYADNLISEVVLFLVLNISSYAFIIFLLLRIFFPDRSSELPPLTGKK
Ga0207802_10002888	F060165	GGAGG	MGDSPRHRPRGAYAQPGEIDTSLGEAESLRPRPAAEPNLKGSTPTLLSSIPELRCTASRPVAECEGKSLGSAHAAESRASPLRPIPPTNPFYKGLAPAGNVEPSRKGLASAPGLVEGKPAAFCLGTDTGLSHGNPALQRGLAPPPGIASTPSVPLRLEIVAIGVRSAVGLDIHTLIFETKYVPPPSPRPELKP