NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209872_1010630

Scaffold Ga0209872_1010630


Overview

Basic Information
Taxon OID3300026838 Open in IMG/M
Scaffold IDGa0209872_1010630 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_2-Sept-14 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)562
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location
Location NameUSA: Columbia River, Washington
CoordinatesLat. (o)46.372Long. (o)-119.272Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008079Metagenome / Metatranscriptome339Y
F035568Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0209872_10106301F035568N/AEVTDPGKVKAYLLNTIKMQILWSTSLTNRQERVTATDSTMPIVMDDDTDLYDKIRDDMQYQDNMAVIETYRGRITDRIKLIVFQTYFDKGYSTARAMAEYFRIPVTSAHYWIQEIKTDLKNLRDEN
Ga0209872_10106302F008079N/AMKIKDEYIGAKISHKGNRITLDANRYDYFVSIGLGYMFEEPTVSEPKVVKYKAVKGPIPAPET

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