Scaffold Ga0209856_1002770

Overview

Basic Information

• Taxon OID: 3300026837
• Scaffold ID: Ga0209856_1002770
• Source Dataset Name: Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T2_25-Nov-14 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 842
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa

Source Dataset Sampling Location

• Location Name: USA: Columbia River, Washington
• Coordinates
  • Lat. (^o): 46.372
  • Long. (^o): -119.272

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038601	Metagenome / Metatranscriptome	165	Y
F077247	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209856_10027702	F038601	N/A	MKLYSPDAKGKYVWQVADAKTRAVSYTVTTSRTAPPDACYGHPMGKYDNTGLYLTFCPNVGADDPKSPQAARYVLHPMAGAERDRADRDRLWREI
Ga0209856_10027703	F077247	GGCGG	LMKLAFDLTEVRRLLRRGIDAKHWTLQDLDNPSPGWLITMEDAKRIAGFTPPTYRNLLRDEPTPTERVEIVSPRDFAVVEAVADPVQRGSAPLLPR