Basic Information | |
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Taxon OID | 3300026837 Open in IMG/M |
Scaffold ID | Ga0209856_1000109 Open in IMG/M |
Source Dataset Name | Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T2_25-Nov-14 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3993 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium → Verrucomicrobium sp. GAS474 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Sand → Unclassified → Sand → Groundwater Microbial Communities From The Columbia River, Washington, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Columbia River, Washington | |||||||
Coordinates | Lat. (o) | 46.372 | Long. (o) | -119.272 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F026867 | Metagenome | 196 | Y |
F033352 | Metagenome / Metatranscriptome | 177 | N |
F042872 | Metagenome | 157 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209856_10001092 | F033352 | AGGGGG | MTDLTKFRLIENIEVMACRNSAERVVKALNRGEVQQAKDLARKHEIAWHITDREFQTLNQPHRNSDFCDDE |
Ga0209856_10001097 | F042872 | AGG | VGSNPTPSESYHYNDLRRNGNTAVITEPKKKHYQQHSLLIRGGYPAEPAYHPNPSVARMWSAQR |
Ga0209856_10001099 | F026867 | GAG | MSSVRLNDTAMKLRKQDQALSLRQLGAAYGLGYVRIKQMRELSGFPLIAGKVIPSDFDQWRLMQTGLNLPRPADRLRSAAGKAHALASRSDSRVSWRQIANTLKAEAWLHELPEGNGSSD |
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