Scaffold Ga0208448_100835

Overview

Basic Information

• Taxon OID: 3300026813
• Scaffold ID: Ga0208448_100835
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2222
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon BE_D (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.733
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065947	Metagenome	127	Y
F099550	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208448_1008353	F099550	GAG	MFTLTDEEKKLLASKRKNMQIVWVPLPILDEIAQIAEKLHLALNQTIIVLTIRALRGFPQQTNNGSAHFLCPICLQSFSNPSDFLTHLRGDENVEIKPHI
Ga0208448_1008354	F065947	GAGG	MLKLNRTFNPFRIFGVLRHSNNINNLPCVAYGTGNLSRRIGRGYFFYDYDTQSEEEVQRFRKYVQHTFYVAYVLFRTKHGVMVMTTLTFAYEQLRKYYDQFQQAFPSDYLWDIPLFLRISEKWDWQTGKVVSPMPQIIDNPKKIDIYKLIREDMYPKKWYRTSD