Scaffold Ga0208448

Basic Information
Taxon OID	3300026813 Open in IMG/M
Scaffold ID	Ga0208448_100554 Open in IMG/M
Source Dataset Name	Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026813 Open in IMG/M

Scaffold ID

Ga0208448_100554 Open in IMG/M

Source Dataset Name

Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2658
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2658

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	Yellowstone National Park, USA
Coordinates	Lat. (^o)	44.733	Long. (^o)	-110.709	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, USA

Coordinates

Lat. (^o)

44.733

Long. (^o)

-110.709

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008949	Metagenome / Metatranscriptome	325	Y
F011097	Metagenome / Metatranscriptome	295	Y
F021133	Metagenome / Metatranscriptome	220	N
F023140	Metagenome / Metatranscriptome	211	Y
F076262	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208448_1005542	F011097	GAGG	MIRDVPLYTSGGTDPFTYQQTGGSPITGNGSNYQVLSFHPNYARLMIFITSLSGTSPSIQFTVGSYVGANYYTLPPITSPQYVYVVGNGNKTIITYLNTSNVVLQQVALPYNIFLNGCYVSWSVSGTSPSISAYIHFEFEDEEEGE
Ga0208448_1005543	F008949	AGGAGG	MSSQTITLGTQTITPKVEDLGNTYYIEFQVKITKYLNNPVNKTIDVKFVCNKYKQVAVPRTDPLSPPVFQTVQKTIQECVEEWYAQHKSVYEVA
Ga0208448_1005544	F076262	AGGTGG	VSFNPVIKGSYTLASPQTVSVAASSSATVSISFTPLGAGNLYVYITLPTGVTATISIGAQTVSLSSGSNQFLIPANVAIGNITINNSNTTAASVVVWALFIEVA
Ga0208448_1005545	F023140	N/A	LKLHRRILLSNVFIGLVTVPVYIVLKPLPFFAVFGVGVLTTLTVLILFFYFLGAKFVGTWAVLQKFAVTLPTSLVLTRLVEDVPRNPYLEYVVLFLVGYMISTPLIFLTYHVTRWFYVKKGRLNTPNL
Ga0208448_1005546	F021133	AGGTGG	MSKRDDLIRQIYENGNYVIKRICEMEPNDDMANFSATDCIIGSANTHLALWIAKEKGYPPDVIGYLENQSKQEQWHCQLHIGKSPKPYDFRVAQKHREILLKYGVYVWMGVMPLLGEKIALAKAICWRRNDDPHFANKFATVDEYYHTTYPLLLLYKYATEEE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208448_100554

Overview

Ecosystem & Geography

Associated Families

Sequences