Scaffold Ga0208448_100452

Overview

Basic Information

• Taxon OID: 3300026813
• Scaffold ID: Ga0208448_100452
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2911
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon OSP_D (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.733
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042427	Metagenome / Metatranscriptome	158	Y
F077500	Metagenome / Metatranscriptome	117	Y
F092367	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208448_1004522	F077500	N/A	MSEEQICRRKHHRWLAKRLAYVGMGNYKEVSFFVWTHSDSLEEAKNDTICRRTKNGFIPIGTFDECLLDPMRRVRRRRERMMSDMWYPSLKKVSENE
Ga0208448_1004526	F092367	GAGG	MSENNVISVKQHFEKIDATVAKILNMLYRDLELGLEDDVVVALKLLLYLLHIIEKKAVTKEEKKAVREVKKQIVEYVTGE
Ga0208448_1004527	F042427	AGGTGG	MTANKTQTRSDSGGASGSAQGAPLPLTLPACECPCHVGGEPFSCGAMCWHPQLDADEYVVELASSTNNVDHYVGLFAIYSGGKLKFIVFEPSNGSTQRFEVV