NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208448_100313

Scaffold Ga0208448_100313


Overview

Basic Information
Taxon OID3300026813 Open in IMG/M
Scaffold IDGa0208448_100313 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3413
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056742Metagenome / Metatranscriptome137Y
F070317Metagenome / Metatranscriptome123Y
F077499Metagenome / Metatranscriptome117Y
F077502Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0208448_1003132F070317GAGMSAMEELKELNLERIVKDAQEGEVCVVNKILKGKLTDLMPLIKDPASLSQKAMEFIQNRGDDIFYLFQCTTRGGRNVKLLVRQSFDPRSTFYQLMKKYKTIKVGDEVNVFYNLEKRRYDFLL
Ga0208448_1003133F077502GAGMTDVAHIVIWIEKNLPEEGKLSELIDNVFSLIQEIILNNLSQGKQPISFESVREIADTFKEVIYRSIEQTIGTLTEEVKQQVDAYFLKKLNDIYDKYYE
Ga0208448_1003135F077499AGGMADLFIFPNESLKPVSYPNITNAEIIFVLTISIPIGSHPESDTPMEEKMKFLSTYTPLEFQKLYYMKTIDKALDILKHLLYTREDNVLFEIANKINSLYDVKELINKVKDVECAKDLKTLNITLTEAKRYIYPDISLSRYASSQAKQLGIKKYEYYARLFQCYVETDKNLDMLTLFRVSNLVFNFLRINNLSHIIKKMQFKDENINRIAEKIKQRVKITLDAMTDRKPIEADTNILNSITIRIKEIDLG
Ga0208448_1003136F056742GGAGGMFITEVEKVYQVKINSCEDFCKFYVLFLSVAEMLYGKHYNYAIFKAITRGRPNLYMCLKCNSTLTAEESVTHTLQHMRQLGYKPLTYEENI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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