Scaffold Ga0208448

Basic Information
Taxon OID	3300026813 Open in IMG/M
Scaffold ID	Ga0208448_100234 Open in IMG/M
Source Dataset Name	Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026813 Open in IMG/M

Scaffold ID

Ga0208448_100234 Open in IMG/M

Source Dataset Name

Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3847
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3847

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	Yellowstone National Park, USA
Coordinates	Lat. (^o)	44.733	Long. (^o)	-110.709	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, USA

Coordinates

Lat. (^o)

44.733

Long. (^o)

-110.709

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056742	Metagenome / Metatranscriptome	137	Y
F070317	Metagenome / Metatranscriptome	123	Y
F077499	Metagenome / Metatranscriptome	117	Y
F077502	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208448_1002343	F070317	AGAAGG	MTQTVANNMPNLEEIKELNLEKAIKDAQEGEVCVVEKILKGKLTDLLPLIKDPATMSQRAMEFIQRRGDDIFYLIHCTTREGRNVKLLVRQSFDPKSTFYNLMKKYKSIKVGDEINIFYNPEKRRYDFLL
Ga0208448_1002344	F077502	GAG	MVNQVTDVAHIILWIEKNLPEEGKLSELIDNVFSLITEIILNNLSQGKQPISFESVREIADAFKEIVYRSIEQSTGTLTEDVKEQVDAYFFKKLSEIYSKYYE
Ga0208448_1002346	F077499	AGG	MRDVFVFPYESLKVVGYPKISNAEIIFILTITVPVGDHPNADSPMDEKMRFLSTYMPLEFQKLQYMKAIDRALDILKYSLYSREDNVLFEIANKINGIYDVKELTNKVKDVECTKDLKQVDVTLTEAKRYIYPDLSLSKYASAQAKRLNMRKYEYYARIFQCYINQDKDLDMLTLFRVSNTVYNYIRLNNLSNLVKKIQFKNDRIAQLMEKIKQRVKITLEAMSDRRPVEPDVNVLNSITIRIKEIDLG
Ga0208448_1002347	F056742	AGG	MKLADCRYKCKQSYFRKSLFVRMFIVEVEKVYGIKVKSCEEFCKFYVIFLSVAEMLYGKHYNYAISKAITRGRPNLYACVKCNSVLTAEESIVHTLQHMKQLGY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208448_100234

Overview

Ecosystem & Geography

Associated Families

Sequences