Scaffold Ga0208448

Basic Information
Taxon OID	3300026813 Open in IMG/M
Scaffold ID	Ga0208448_100143 Open in IMG/M
Source Dataset Name	Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026813 Open in IMG/M

Scaffold ID

Ga0208448_100143 Open in IMG/M

Source Dataset Name

Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4958
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (84.62%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4958

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (84.62%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	Yellowstone National Park, USA
Coordinates	Lat. (^o)	44.733	Long. (^o)	-110.709	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Yellowstone National Park, USA

Coordinates

Lat. (^o)

44.733

Long. (^o)

-110.709

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033508	Metagenome / Metatranscriptome	177	Y
F065947	Metagenome	127	Y
F072527	Metagenome / Metatranscriptome	121	N
F099550	Metagenome / Metatranscriptome	103	Y
F101506	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208448_1001431	F033508	AGG	LAAEAAPTPFVSSTTMRRVSATNTSQLTIPARIGYRHVLYDVFLTGAGPYMYIDIAVGTRVFIRLPMQAGNCYVILQPGAKYQGKGFLWGLSDLFGAENLPNAAEDEDINITVNGTVTRIDAYYAEIKPQDVTSHTVPGGSDAKVKPFIEVLDTLVTTTGNGINVLNENMPTGLGLLDNSGRVKATTQFTLLTAFADYVSSGPNFTEYSRLHIFDEDEELFTPLNHEGLFIDYTVTIGDLFMNFPMGQYWKPDQPYVFKPNHQVSVKADVPAVTGTGSTLRVALIGVRERIG
Ga0208448_10014310	F099550	AGG	MYQLTDEIKKLLATKHKNMQIVWVPLPVLDEIAQIAEQLHLALNQTIIVLVIHALRESTPQPNNGSGHFLCPICLQEFDIADDFLAHLRGDEDVKIKPHV
Ga0208448_10014311	F065947	AGG	MLKSNHMFNLDKIRSVLKRRKIDDLPCVAYGTGNLSRRIGRGYFFYDYDTQSEEEVQRFRKYVQHTFYVAYVLYRTKHGVMVMSTLTFSFEQLRKYYDQFQQEFPSDYLWDIPLFLRLSEKWNWQTGQVVSAMPAIIDNPKQVDIYKLVREDMYPKKWYRTSD
Ga0208448_1001433	F072527	N/A	MSQTPNRLAELLQQAVLAFGAERVQVLQKIRQYIAQTDCTVLNVQLQQITNINMLRMLQAAGVPQCIQATFYLQINKALKGVTP
Ga0208448_1001435	F101506	AGTAGG	MNEDAVARTRIGAVEQRIHNLEEQINDIRATQLRQLERQNYVLMLLAISLITTTINLVVLLIK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208448_100143

Overview

Ecosystem & Geography

Associated Families

Sequences