Scaffold Ga0208448_100096

Overview

Basic Information

• Taxon OID: 3300026813
• Scaffold ID: Ga0208448_100096
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6088
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Sulfolobales → Sulfolobaceae → Sulfolobus → Sulfolobus islandicus → Sulfolobus islandicus Y.N.15.51 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.733
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008949	Metagenome / Metatranscriptome	325	Y
F011097	Metagenome / Metatranscriptome	295	Y
F021133	Metagenome / Metatranscriptome	220	N
F045200	Metagenome / Metatranscriptome	153	Y
F076262	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208448_1000961	F021133	N/A	MGRRDDLIRQIYENGNYAIKKICEMNPDDKMANFSATDCIIGTANTHLALKIAKEKGYPQDVIEYLENQSKQEQWHCKLHIGKPPKPYDFVVAQKHREILLKYGIYVWMGVMPLLGEKIALAKAICWRRNDDPHFVNKFATVDEYYHTTYPLLLLSKYASEEELEKIVELQKEYIVNIFKLK
Ga0208448_1000964	F076262	AGGTGG	MSFNPVIKGSYTLATPQTVSVAASSSSSVSISFTPLGAGELYVYITLPSGVSASISIGGQSVSLANGSNQFLIPANTPIGNITINNSNTTAVTVVVWALFIEVA
Ga0208448_1000965	F008949	AGGAGG	MSSQTVQLGTQTITPKVQDLGNSYYIEFQVNITKYLNNPVNQTIDVKFICNKYKQVPGANPLSPPTVQTVQKTIQECVDEWYNQYKSVYEVA
Ga0208448_1000966	F011097	GGAGG	MLRDVVLYTSGGTDPFTGLSTRGSPITGNGSNYQLLRFHPSYARLIILITGLAGTSPSIQFTIGTTYGSNNYTLLPIISSPQYVYIIGNENKTIITYLNTSWQVLQQVELPYNIFLNGVNVSWSVSGTSPSITAYIHFEFEDEEEGEE
Ga0208448_1000967	F045200	N/A	TTNEKPQFSIFYAKVHPDQYKPGALASTWLDPPVLLVSYDQISRDVVNWADNVFTAAGYTPSSPGVINVPSNVYVTNYGYTTYYTAPSTVTLNFTGTPELKQLHMIYDMLDDTVLMYFSITVPNWNPATKAQYVYKFPVSLLKSQQSINQYAVSGLTPTTTSTPPPNDKPYFLGGLKFDSTVEQTIGNAFDTLGNTLQMQSAPQFSISFDWYKLGGYMGYKPSNGFLPAIYVGNPVYMNAMNSVNYNYPHGDSLMAIAFADIHKNPAQPQTYYQPIITNYGYPFPGFGFLPENLESCPSSYGSNSYYCIPILGFAGQLDPFDLGLNIDKFGSIVPGESFGIHGAYAIPITLPPRPDWGGISSIRMKMLYVAPIFHQFQGYGGLSFAWTRDSVEIPYYPEMGTCRPYLTTLPDGKLKVTMGGYHADNYIDGIAIYIDKSVISPKGKTLVTVPPIIFGQTSPGGSYYAIAGANGSNNFISHGVVAYTFGKKYARVYFNMNANNAGFVNIYTRYRSRSAPDLQQMYGNSPNSGIVYSPVIERNFGTLVYYSDYSYGMPSQLYYSRTSKFRVDGQVLWIFSTGGYPSMGGIGPVYIELEGD