Scaffold Ga0208448_100003

Overview

Basic Information

• Taxon OID: 3300026813
• Scaffold ID: Ga0208448_100003
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23501
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (10.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.733
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021808	Metagenome / Metatranscriptome	217	Y
F048413	Metagenome / Metatranscriptome	148	N
F090626	Metagenome / Metatranscriptome	108	Y
F097670	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208448_10000312	F021808	N/A	MMIEEPPYGTIAWFFYEIDERQRQIYELVFDIEQKLAKVKDLLNEIDLLKAQLETNVNVGKI
Ga0208448_10000315	F048413	N/A	MMNQEMNKVTIVIKYEKDYAEYRYILTKIDEMAEKLNIDKYLLRYLILKEFANNEKWQNELIEKLKKNG
Ga0208448_10000325	F090626	N/A	MFRIVKFENIYFGKNSLVKLFANKTHIENSTDYDSTALAFLLDVSDFTNTDALLSHFAIVNDNEIRPILVKWNLRIIHGRLLILVNQLSGPQDTKMLLKEFESTIENQKPETIKYIAGQYAKALADAKGLQQVYNFLVQRIYQLKSIGIKKNEEEVRRLAEIYR
Ga0208448_10000330	F097670	N/A	MMNYKIFDKDIYTETNEIITINLKTSETNLEIKRYFYDGKELKEIKDLQEYNLKIYEIVQKVQEEFTKFSTKHAKPPIGYIPISAIIFEYMLNRNNVILIAYANISKVENEISKEITNDTIKIIIKSKTIFNKEWNFESTQNLSPEVKDNVT