Scaffold Ga0208448

Basic Information
Taxon OID	3300026813 Open in IMG/M
Scaffold ID	Ga0208448_100002 Open in IMG/M
Source Dataset Name	Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026813 Open in IMG/M

Scaffold ID

Ga0208448_100002 Open in IMG/M

Source Dataset Name

Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26063
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (57.14%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

26063

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (57.14%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	Yellowstone National Park, USA
Coordinates	Lat. (^o)	44.733	Long. (^o)	-110.709	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, USA

Coordinates

Lat. (^o)

44.733

Long. (^o)

-110.709

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026923	Metagenome	196	N
F038746	Metagenome	165	Y
F052280	Metagenome	143	Y
F058287	Metagenome	135	N
F067919	Metagenome	125	N
F070689	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208448_1000021	F052280	AGG	MPESQVLMIELERYGFRFYLNNNPEKSWFVNVNNARPEYFVFVEEKNREMISILDYKYEDFGVKNILELLIGMILRPNESFESLTGEKADIKEIHIFHF
Ga0208448_10000210	F070689	GGTGG	MTLEVTYNVYRRIIEFSKTSNKPIPILRYKLPNGIRKGDIIKIRSTRNTSRTKTLVAEVVDIKKYNTNKDSVPYDELKPIYEDYVNVIPKLGQIVIVYVKPINF
Ga0208448_10000237	F026923	AGGAGG	MSDRTQIKLRIDITYDDVIRMFNEVEQKIRNEVVKFLPYPDVKLILTSFCLHRTVDDMYVVILKYKADVRYLDLRDIKNIDVVIRSDGVYAVL
Ga0208448_10000241	F058287	N/A	MSSTKSYFESIDKVCLQIKYLRTLFLESRIEPIKGLSGLLLLKSIYIIIKMVTELALGEVPPVNKDISEIDLSKIKEPRKTFDDVCWLIVNIFKLAYITQDNQKRYKLLLLLNKVENIFIDLVHSTVFNEDIDYDQVDEELTKIKEELQEVIKV
Ga0208448_1000025	F067919	GGGGG	LTTRSLSRGKELILINKGNEVEFLIDDADDGRVWVIKPEYHVKKGIMILEKRNGYIIRLIEVNLRKLGVRNMNELIKLIRTRPSETVESLIGEKVKISKVTVKDLSNSNIED
Ga0208448_1000026	F038746	AGG	MIRKGNKYIMIIKTPKDLEDIKNNIDKYKNELKDGELIEIQISKSGKYMLKMMLSKEGIKYEISGDDKKHVLTVQNKDDAVALQKLIQILLAIAFNKPN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208448_100002

Overview

Ecosystem & Geography

Associated Families

Sequences