Scaffold Ga0207778_113327

Overview

Basic Information

• Taxon OID: 3300026783
• Scaffold ID: Ga0207778_113327
• Source Dataset Name: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 36 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 590
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. GAS231 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Luquillo Experimental Forest Soil, Puerto Rico
• Coordinates
  • Lat. (^o): 18.0
  • Long. (^o): -65.0
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005355	Metagenome / Metatranscriptome	403	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207778_1133271	F005355	N/A	LVCAAAAVATSVPSTHANNKPTEVPAKVIAHLPLQEAPGSEMLLQNKGDKEYLYVQKASKQGFTVVDVTKPALPSLVKSTNSANDATAGNLEMVSPDVGLAAVPDRSSKGIIHSSDNATETVKVLDLSDPAHPKVLQTFAGVTSFLQDAGRGLIYLANNEGLWILRYPKPGLTPAKKKRPCTSEDAIRAMPAECE