Scaffold Ga0208447

Basic Information
Taxon OID	3300026768 Open in IMG/M
Scaffold ID	Ga0208447_100497 Open in IMG/M
Source Dataset Name	Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Slide_host_7_15 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026768 Open in IMG/M

Scaffold ID

Ga0208447_100497 Open in IMG/M

Source Dataset Name

Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Slide_host_7_15 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5725
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

5725

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (22.22%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	Yellowstone National Park, USA
Coordinates	Lat. (^o)	44.7315	Long. (^o)	-110.7113	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, USA

Coordinates

Lat. (^o)

44.7315

Long. (^o)

-110.7113

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F011097	Metagenome / Metatranscriptome	295	Y
F045200	Metagenome / Metatranscriptome	153	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208447_1004973	F011097	AGAAGG	MIRDVPLYISGGTDPFTGLPTEGSPITGGGYNSQLLGFNPKYARLLILVTSLSGTAPSIEFTVGSPYGSNFYNIVTASSPVYIYVVAKDDKTTIVFLNTSWKVFQQAELPYNIFFNGVNVSWSVSGTSPSIDAYIHFEFEDDEETE
Ga0208447_1004974	F045200	AGG	MSYQDTVVTILSPIRDRNYLKTLVNPTSTAPDAGVGSVDNIFFFEAGNYDGGLVPSSPPEDRTYLVWFGTPEGTNDNNALYSIFYAKVNKERYRPNARASEWLDPPVLLVTYDQISRDIVNWADNVFTSVGYTPSSPGVINVPNNVYVNNYGYTNYRGASTTVSLNFTGVPQLKQLHMVYDMIDNTILMYFSVIVPNWNPAIKSQYVYKFPLSLLKSYQSINQYASSGLTPTTTLVPPPNDKPYFLGGLKFDKTIEQTIGTSVSTMWFNSLQMQSAPQFTISFDWYKLGGFMGYKPSNGFLPAIYIGNALSMIPYNYPHGDSLMAIAFSDIHKNPAQPQTYYQPIITTYGYAMPAFGSLQLQENLQTCPSSYGNNSYYCIPILGFAGHLDTFDLGLNIDKFGSIVPGESFGIHGVYAIPITLPPKPDWGGISSMRMKMLYVAPIFHQFQGYGGLSFAWTRDSIEIPYYPKMGSCRPYLTSLPDGKLKVTMGGYHADNYIDGIAININESVLSPRGKTLVTTPSLIFGQSSPGGSYYVISKSNGFDYIFHGVVTYTFGKKYARIYLNLNADNSSVINVYTRYRSESAPDLQQMYGQSANANLVYYPTVERNFGTLVYATDYSYNMPYTTTYPRTKKFIVKGEILWVITHNSYSPVWVELEG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208447_100497

Overview

Ecosystem & Geography

Associated Families

Sequences