Scaffold Ga0208447_100097

Overview

Basic Information

• Taxon OID: 3300026768
• Scaffold ID: Ga0208447_100097
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Slide_host_7_15 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15969
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (8.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062912	Metagenome / Metatranscriptome	130	Y
F097670	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208447_10009717	F097670	N/A	MMNYKVFDKDIYTETDEIITINLKTSETNLEIKRYFYDGKELKEIKDLQEYNLKIYEIVQKVQEEFTKFSTKHAKPPIGYIPISAIIFEYMLNRNNVILIAYANISKVENEISKEILGDIIKIIIKSKTIFNKEWNFESTQNLSPEVKDNATKIIEKALKSAKTILKNNL
Ga0208447_1000973	F062912	N/A	MDPQTILAKTYNLFLISDIIENESEIDRELINLLANKDYNNMAKTLIYALMYTINEDPVYKDIRQIYMNYLIDLLYMIDKIGFNNEMIIKIFVKLIYQFYSYSLQYKINFITDKEKREFVKAELNELYMLIEE