Scaffold Ga0208559_105183

Overview

Basic Information

• Taxon OID: 3300026762
• Scaffold ID: Ga0208559_105183
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1182
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076263	Metagenome / Metatranscriptome	118	Y
F081547	Metagenome / Metatranscriptome	114	Y
F087442	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208559_1051831	F087442	GAGG	MMREGLVKAGDLIIDCKPCYIAGAGFTKDDVYVISTGTVVFKWYDKIALITVSEEGTKITLLDIIDVRFLVERNENCMVTKL
Ga0208559_1051832	F081547	GAGG	MSYLRGVFVSFNGETYYLSCGIVNGGTLDPETYTVNDPSLMMVRLGRDLYIVANDLKQLIPIEPIKQLLTSETSKVYNEAMAQGNEVKPI
Ga0208559_1051833	F076263	N/A	MVSLEDLSAILDDLEDLCSRLPEGITFHPTLELRRNYANEESTYIKFDCQNHRYILTIIREGVARTTRVSTKEELFRRLFPDYIGEGVI