NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208559_102666

Scaffold Ga0208559_102666


Overview

Basic Information
Taxon OID3300026762 Open in IMG/M
Scaffold IDGa0208559_102666 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2058
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008949Metagenome / Metatranscriptome325Y
F011097Metagenome / Metatranscriptome295Y
F023140Metagenome / Metatranscriptome211Y
F030159Metagenome / Metatranscriptome186Y
F076262Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0208559_1026661F030159N/AIFHQFQGYGGLSFAWTRDSVEIPYYPEMGTCRPYLTTLPDGKLKVTMGGYHADNYIDGIAIYMDKSAISPKGKTLVTVPPLIFGQTSPGGSYYVISGDYGTSTIYHGVVAYTFGKKYARVYLNINAGNGAFVNIYTRYRSRSAPDLQQMYGNSPYPNNTAVYYPVVEMNFGTLVYATDYSYNMPYTTDYPRTSKFRVDSQVLWVIIKQSSSPVWIELEGD
Ga0208559_1026662F011097GGAGGMIRDVVLYTSGGTDPFTNLPTSGGSITSNGSNGQLLRFHPNYARLLILITGLSGTSPSIQFTVGSFYGSNLYTLPLITSPQYVYIICNENKTIITYLNTSWQVLQQVELSYNIFLNGVSVSWSVSGTSPSITTYIHFEFEDEEEDEE
Ga0208559_1026663F008949AGGAGGMSSQTVTLGTQTITPKVEDMGNTYYIEFQVKITKYLNNPVNHTIDVRFTCNKYKQVVVPSNPLSSPTVQTVQKTIQECVDEWFDQHKSVYEVA
Ga0208559_1026664F076262AGGTGGMSLNPVIKGSYTLAAPQTVSVAASSSSSVSISFTPLGAGELYVYIALPSGVTATISIGGQSVSLSNGGNQFIIPANTPIGNITINNSNTTAVSVVVWALFIEVA
Ga0208559_1026665F023140N/AVFGAGILTTLTVLILFFYFLGAKFVGTWAILQKFAVTLPTSFMLAHLVKHLPSNPLLDYIILFVVGYAISTPLIFLTYYITMILYGKKR

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