Scaffold Ga0208559

Basic Information
Taxon OID	3300026762 Open in IMG/M
Scaffold ID	Ga0208559_101848 Open in IMG/M
Source Dataset Name	Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026762 Open in IMG/M

Scaffold ID

Ga0208559_101848 Open in IMG/M

Source Dataset Name

Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2830
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2830

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	Yellowstone National Park, USA
Coordinates	Lat. (^o)	44.7315	Long. (^o)	-110.7113	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, USA

Coordinates

Lat. (^o)

44.7315

Long. (^o)

-110.7113

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011097	Metagenome / Metatranscriptome	295	Y
F045200	Metagenome / Metatranscriptome	153	Y
F076262	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208559_1018481	F045200	N/A	FYAKVHPDQYKPGAPASQWLDPPVLLVSYDQISRDVVNWADNVFTAAGYTPSSPGVINVPSNVYVPNYGYVNYFVAPLTTLTTVTLNFTGTPELKQLHMIYDMLDDTVLMYFSITVPNWNPATKAQYVYKFPVSLLKSQQSINQYAVSGLTPTTTSAPPPNDKPYFLGGLKFDSTVEQTIGNALSDAWLNTLQMQSAPQFAISFDWYKLGGFMGYTPSHGFLPAIYIGNSLYMSFYNYPHGDSLMAIAFADIHKNPAQPQTYYQPIITNYGYNFIAFGEERLPENLESCPSSYGSYSYYCIPILGFAGQLDGFDPGLNIDKFGSIVPGESFGIHGTYIIPITLPPRPDYGGISSIRMKMLYLAPIFHQFQGYGGLSFAWTRDSVEIPYYPEMGTCRPYLTTLPDGKLKVTMGGYHADNYIDGIAIYMDKSDISPKGKTLVTVPPLIFGQTSAGGNYYVIAGANGANYIYQGVVAHTFGKKYARVYLNNIFPGNAAFAAFVNIYTRYRSRSAPDLQQMYGNSPNPNNTATYYPSVERNFGTLVYATGYSYDMPYEYPRTSKFRVDSQVLWAITNNGFGPVFIELEGD
Ga0208559_1018482	F011097	AGAAGG	VIRDIPLATSGGTDPFTGLPVGGSPITGNGSNGQLLRFHPNYARLMIFITGLSGTSPSIQFTIGSYYGSNFYTLPPITSPQYVYIIDNENKTIITYLNTSSQVLQQVELPYNIFLNGVNISWSVSGTSPSITTYIHFEFEDEEEGEE
Ga0208559_1018484	F076262	AGGTGG	MSLNPVIKGSYTLAAPQSVSVAASSSSSVSISFTPLGAGELYVYIALPSGVTATISIGGQSVSLANGSNQFLIPANTTIGNITINNSNTSAVTVVVWALFIEVA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208559_101848

Overview

Ecosystem & Geography

Associated Families

Sequences