Scaffold Ga0208559_101690

Overview

Basic Information

• Taxon OID: 3300026762
• Scaffold ID: Ga0208559_101690
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3049
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075084	Metagenome / Metatranscriptome	119	N
F080245	Metagenome	115	N
F081547	Metagenome / Metatranscriptome	114	Y
F087442	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208559_1016905	F081547	GGTGG	MPYLRGVFINFGEETYYLSCGIVNGGNLDAETYTIKEPELMMVRLGRDIYIVTSQLKLLIPVEPIKTLLSSETSKVYNEMLSQGNEVKPA
Ga0208559_1016906	F087442	GAGG	MMREGLVKAGNLVVDCKPCYVAGTGFTKDDIYVISEGTVVFKWYDKIAVVAVGEEGTKVNLLDIVDVRFLVERNESCMVTKL
Ga0208559_1016907	F080245	AGGA	LHGDKTVIFVWSARVIIPGFRDEVFVSPALINRYAELTEDVYEVGMFMVPHKGHTLLFLPTMVIKVDDELMKNLEQTTIEDLNIPLNTISNVFT
Ga0208559_1016908	F075084	GAG	VRPCQKDICLLYSLGADYAKLIDFTNQNFQGKLFRAGARAMIYARRLMASWYGYDTGVLIETALRRILRRSITYCNIMRRLGLESEYCRRYIIYDAVPCDLVSVFTVDVAYGDIIHMIANYNSENVSKILTKMTEMCSTYEVR