Scaffold Ga0208559_101412

Overview

Basic Information

• Taxon OID: 3300026762
• Scaffold ID: Ga0208559_101412
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3488
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 1 → Candidatus Marsarchaeota G1 archaeon BE_D (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065947	Metagenome	127	Y
F099550	Metagenome / Metatranscriptome	103	Y
F101506	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208559_1014123	F065947	AGAAG	MLNRTFSLSKIFVGLKRKRNNELPCVAYGTGNLSRRIGRGYFFYDYDTQSAQEVERFRKYVQHTFYVAYVLFRTKHGVMVMTTLTFPYEQLRKYYDQFQQAFPSDYLWDIPLFLRISEKWDWQTGKVVSPMPAVIDNPKKIDIYKLIREDMYPKKWYRTSD
Ga0208559_1014124	F099550	N/A	MQIVWVPLSVLDEIAQIAEKLHLALNQTIIVLTIRALRSNTPQQPNNGSARFLCPICLQEFTDPHVFLTHLTGDEEVDVKPHI
Ga0208559_1014127	F101506	N/A	MSEDIVARTKISGIEQRIRSLEEQINDIRTTQLRQLERQNYVLALLAISLITTIVNLIVLLVK