Scaffold Ga0208559_101144

Overview

Basic Information

• Taxon OID: 3300026762
• Scaffold ID: Ga0208559_101144
• Source Dataset Name: Extremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4198
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, USA
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.7113

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024140	Metagenome / Metatranscriptome	207	Y
F067920	Metagenome / Metatranscriptome	125	N
F084461	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208559_1011443	F067920	N/A	MPADLVFGISDQGLFGAISSTLEYILSFLKTLVEQASKYAVDFLKQLWSNPTQTITFLTLLGVLLV
Ga0208559_1011444	F084461	AGG	MSFDLASLIKNNKAILQTENGKIVLRISFDDLVQAMINGLPEQSRKVVSITHDGKQLIISFDASILSGMVGLIAR
Ga0208559_1011447	F024140	N/A	MNWKPSSLSHIVSILALMISVLGINAITFYFMHTLDISQFFFLQLTNITFGIGMSYYAVNFAMSEKGVTIQSKPETTA