NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208559_100782

Scaffold Ga0208559_100782


Overview

Basic Information
Taxon OID3300026762 Open in IMG/M
Scaffold IDGa0208559_100782 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5804
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006070Metagenome / Metatranscriptome382N
F011233Metagenome / Metatranscriptome293N
F027904Metagenome / Metatranscriptome193N
F040183Metagenome / Metatranscriptome162N

Sequences

Protein IDFamilyRBSSequence
Ga0208559_1007821F027904GGTGGMEKYEPPEYDLFNLNNGSTAIGTTPAPLLYEGQANATVIVPPDLTLRVKQVIIQNATTSLITVQLLAVTTVSGAPTPVAKTPPIPVPASSAVTLDEDEWSISVKTGYSLAAVSSAANSANVFVKAYFVKGTGSPI
Ga0208559_1007824F011233N/ALAIPWFLPFVKGWRYHVPQLQTQLLSGIPVSFTGTYTVLNGEFPGYFVSAAIGTTDPNFITRASADGLTVIEVTVGELRDARVYRNQMGEPNILSYASYIRGFPLPVYALSLSGDGLPFYQSIKIEIIPRNQPALITGFAANIIEIYDVDLFKESVKEFFESITPSTAPPVVPTPPRFVANEVVSTRLPVKVT
Ga0208559_1007825F006070AGGMTLYPYLVVDLPITDTNTHTYRTDPFNPLAPTQPGISLVRLGESVPPMRAFNIYVYNYANAALSVQVIANENAKNYQYGALLDGLDYQSESGYPDFNVGSAVAVPAGSLSTPSVYAIQSDFYMNAAERYLSVALTYSTAPTSGFVRAHIDLFYEGF
Ga0208559_1007827F040183N/AMKLKYPFPQRFHYLTVLGKYLTPNTTIVASGANTGPLTANTVCDFVQTPNHKELAVNLTIQAVSGTFSTGQGLTAYFDVLDPVEPQNVNVNSSERPPVLELKLNSTAITTAPTTIRFIIANGVATVWINGTSTALGNVNVPYIWQVRFTITGTSPSFSIVGTYEARE
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